Index _ | A | B | C | D | E | F | G | H | I | L | M | O | P | R | S | T | U | V _ _1020_TO_GSN_MAPPING (in module autoclean.utils.montage) __init__() (autoclean.core.task.Task method) A annotate_noisy_epochs() (autoclean.mixins.signal_processing.segment_rejection.SegmentRejectionMixin method) annotate_noisy_segments() (in module autoclean.functions.segment_rejection.segment_rejection) annotate_uncorrelated_epochs() (autoclean.mixins.signal_processing.segment_rejection.SegmentRejectionMixin method) annotate_uncorrelated_segments() (in module autoclean.functions.segment_rejection.segment_rejection) apply_autoreject() (autoclean.mixins.signal_processing.autoreject_epochs.AutoRejectEpochsMixin method) apply_ica_component_rejection() (autoclean.mixins.signal_processing.ica.IcaMixin method) apply_ica_rejection() (in module autoclean.functions.ica.ica_processing) ArtifactsMixin (class in autoclean.mixins.signal_processing.artifacts) assign_eog_channels() (autoclean.mixins.signal_processing.basic_steps.BasicStepsMixin method) autoreject_epochs() (in module autoclean.functions.advanced.autoreject) AutoRejectEpochsMixin (class in autoclean.mixins.signal_processing.autoreject_epochs) B BasicStepsMixin (class in autoclean.mixins.signal_processing.basic_steps) C ChannelsMixin (class in autoclean.mixins.signal_processing.channels) classify_ica_components() (autoclean.mixins.signal_processing.ica.IcaMixin method) (in module autoclean.functions.ica.ica_processing) clean_bad_channels() (autoclean.mixins.signal_processing.channels.ChannelsMixin method) compare_vision_iclabel_classifications() (autoclean.mixins.viz.ica.ICAReportingMixin method) configure_logger() (in module autoclean.utils.logging) convert_channel_names() (in module autoclean.utils.montage) create_eventid_epochs() (autoclean.mixins.signal_processing.eventid_epochs.EventIDEpochsMixin method) (in module autoclean.functions.epoching.eventid) create_json_summary() (in module autoclean.step_functions.reports) create_processing_summary() (in module autoclean.functions.visualization.reports) create_regular_epochs() (autoclean.mixins.signal_processing.regular_epochs.RegularEpochsMixin method) (in module autoclean.functions.epoching.regular) create_run_report() (in module autoclean.step_functions.reports) create_sl_epochs() (in module autoclean.functions.epoching.statistical) crop_data() (in module autoclean.functions.preprocessing.basic_ops) crop_duration() (autoclean.mixins.signal_processing.basic_steps.BasicStepsMixin method) D decode_compressed_yaml() (in module autoclean.utils.config) detect_bad_channels() (in module autoclean.functions.artifacts.channels) detect_dense_oscillatory_artifacts() (autoclean.mixins.signal_processing.artifacts.ArtifactsMixin method) (in module autoclean.functions.segment_rejection.dense_oscillatory) detect_muscle_beta_focus() (autoclean.mixins.signal_processing.artifacts.ArtifactsMixin method) detect_outlier_epochs() (autoclean.mixins.signal_processing.outlier_detection.OutlierDetectionMixin method) (in module autoclean.functions.epoching.quality) drop_channels() (autoclean.mixins.signal_processing.channels.ChannelsMixin method) (in module autoclean.functions.preprocessing.basic_ops) drop_outer_layer() (autoclean.mixins.signal_processing.basic_steps.BasicStepsMixin method) E EventIDEpochsMixin (class in autoclean.mixins.signal_processing.eventid_epochs) F filter_data() (autoclean.mixins.signal_processing.basic_steps.BasicStepsMixin method) (in module autoclean.functions.preprocessing.filtering) fit_ica() (in module autoclean.functions.ica.ica_processing) from_value() (autoclean.utils.logging.LogLevel class method) G generate_bad_channels_tsv() (in module autoclean.step_functions.reports) generate_ica_reports() (autoclean.mixins.viz.ica.ICAReportingMixin method) generate_processing_report() (in module autoclean.functions.visualization.reports) get_10_20_to_gsn_mapping() (in module autoclean.utils.montage) get_epochs() (autoclean.core.task.Task method) get_flagged_status() (autoclean.core.task.Task method) get_gsn_to_10_20_mapping() (in module autoclean.utils.montage) get_raw() (autoclean.core.task.Task method) get_run_record() (in module autoclean.utils.database) get_standard_set_in_montage() (in module autoclean.utils.montage) gfp_clean_epochs() (autoclean.mixins.signal_processing.gfp_clean_epochs.GFPCleanEpochsMixin method) (in module autoclean.functions.epoching.quality) GFPCleanEpochsMixin (class in autoclean.mixins.signal_processing.gfp_clean_epochs) GSN_TO_1020_MAPPING (in module autoclean.utils.montage) H hash_and_encode_yaml() (in module autoclean.utils.config) I IcaMixin (class in autoclean.mixins.signal_processing.ica) ICAReportingMixin (class in autoclean.mixins.viz.ica) import_eeg() (in module autoclean.io.import_) import_epochs() (autoclean.core.task.Task method) import_raw() (autoclean.core.task.Task method) interpolate_bad_channels() (in module autoclean.functions.artifacts.channels) L load_config() (in module autoclean.utils.config) load_valid_montages() (in module autoclean.utils.montage) LogLevel (class in autoclean.utils.logging) M manage_database() (in module autoclean.utils.database) message() (in module autoclean.utils.logging) O OutlierDetectionMixin (class in autoclean.mixins.signal_processing.outlier_detection) P plot_bad_channels_with_topography() (autoclean.mixins.viz.visualization.VisualizationMixin method) plot_ica_components() (in module autoclean.functions.visualization.plotting) plot_ica_full() (autoclean.mixins.viz.ica.ICAReportingMixin method) plot_psd_topography() (in module autoclean.functions.visualization.plotting) plot_raw_comparison() (in module autoclean.functions.visualization.plotting) plot_raw_vs_cleaned_overlay() (autoclean.mixins.viz.visualization.VisualizationMixin method) R RegularEpochsMixin (class in autoclean.mixins.signal_processing.regular_epochs) reject_bad_segments() (autoclean.mixins.signal_processing.artifacts.ArtifactsMixin method) rereference_data() (autoclean.mixins.signal_processing.basic_steps.BasicStepsMixin method) (in module autoclean.functions.preprocessing.referencing) resample_data() (autoclean.mixins.signal_processing.basic_steps.BasicStepsMixin method) (in module autoclean.functions.preprocessing.resampling) run() (autoclean.core.task.Task method) run_basic_steps() (autoclean.mixins.signal_processing.basic_steps.BasicStepsMixin method) run_ica() (autoclean.mixins.signal_processing.ica.IcaMixin method) S save_epochs_to_set() (in module autoclean.io.export) save_raw_to_set() (in module autoclean.io.export) save_stc_to_file() (in module autoclean.io.export) SegmentRejectionMixin (class in autoclean.mixins.signal_processing.segment_rejection) set_channel_types() (autoclean.mixins.signal_processing.channels.ChannelsMixin method) set_database_path() (in module autoclean.utils.database) step_convert_to_bids() (in module autoclean.utils.bids) step_create_dataset_desc() (in module autoclean.utils.bids) step_create_participants_json() (in module autoclean.utils.bids) step_prepare_directories() (in module autoclean.utils.file_system) step_psd_topo_figure() (autoclean.mixins.viz.visualization.VisualizationMixin method) step_sanitize_id() (in module autoclean.utils.bids) T Task (class in autoclean.core.task) trim_edges() (autoclean.mixins.signal_processing.basic_steps.BasicStepsMixin method) U update_task_processing_log() (in module autoclean.step_functions.reports) V VALID_MONTAGES (in module autoclean.utils.montage) validate_channel_set() (in module autoclean.utils.montage) validate_config() (autoclean.core.task.Task method) validate_eeg_system() (in module autoclean.utils.config) validate_signal_processing_params() (in module autoclean.utils.config) verify_topography_plot() (autoclean.mixins.viz.ica.ICAReportingMixin method) VisualizationMixin (class in autoclean.mixins.viz.visualization)